"Our collaboration with Two Blades Foundation, The Sainsbury Lab and DuPont Pioneer strengthens the possibility to provide growers with alternatives to diminish the economic impact of the disease, which in Brazil alone is estimated at $1.7 billion for the 2013-2014 growing season."

—Professor Sergio H. Brommonschenkel, Universidade Federal de Viçosa, Brazil

The challenge    

In the 2001/2002 growing season, Asian soybean rust (ASR) first appeared in Brazil, which produces 30% of all soybeans. ASR is caused by the airborne fungus Phakopsora pachyrhizi and can cause yield losses of up to 80% without chemical control. Due to the Brazilian climate and the large acreage of soybean in Brazil, this fungal disease quickly reached epidemic proportions. For effective disease management, more fungicide is now required than for any other disease, with an average estimated cost in Brazil of $2 billion per year. The fungus is highly adaptable and as a result the three main groups of fungicides that are used to control ASR are less effective every year. This development will result in additional application cost for growers and an increased impact on the environment. For a durable, benign, integrated disease management strategy, resistant varieties are urgently needed. However, soybean germplasm is derived from a narrow genetic base, and extensive screening for useful resistance has yielded few candidate genes. Moreover, the soybean resistance genes that have been deployed in the field so far have not proved durable. Ever since its introduction, the disease has proven a difficult challenge for growers. 

ASR infographic

The strategy

The 2Blades group at The Sainsbury Laboratory, Norwich, UK, aims to develop and deploy durable, race-independent resistance against ASR in collaboration with the Universidade Federal de Viçosa and DuPont Pioneer.

Although resistance against ASR is rare in soybean itself, resistance in other legume hosts of P. pachyrhizi is more common. We have identified novel sources of resistance in related legumes such as Pigeonpea, and we are testing their effectiveness in soybeans. Recently we published a first report demonstrating that the CcRpp1 gene from Pigeonpea can confer full resistance against ASR in soybean. 

We continue to identify genes from Pigeonpea and other soybean relatives that can be delivered together to provide durable resistance, in a resistance gene stack.

Resistance genes are identified and isolated by the 2Blades group, and DuPont Pioneer deploys these novel ASR resistance genes in breeding programs to develop soybean varieties that minimize grower losses due to ASR.

A heavily infected soybean field near Carazinho, Rio Grande do Sul, Brazil

The science

Like other rust fungi, P. pachyrhizi is an obligate pathogen that cannot survive cold winters when its host plant dies. However, in South America, mild temperatures and year round soy cultivation keep the innoculum level high. One acre of rust-infected soybean can produce 400 billion spores per day.  Atypically for rusts, P. pachyrhizi also infects a large number of alternate hosts which can serve as reservoirs of infection.

P. pachyrhizi has the ability to adapt rapidly to evade detection by the plant immune system.  While the pathogen may not undergo sexual reproduction in South America, the large number of asexual spores produced facilitates the selection of new variants that evade plant defenses.  Our team is also working to understand the basic biology of the pathogen in order to determine which pathogen factors (“effector proteins”) may be recognized by resistance genes and what types of resistance may be the most durable.

 

Program Impacts

Kawashima C, Guimarães G, Nogueira S, MacLean D, Cook D, Steuernagel B, Baek J, Bouyioukos C, Melo B, Tristão G, Camargos de Oliveira J, Rauscher G, Mittal S, Panichelli L, Bacot K, Johnson E, Iyer G, Tabor G, Wulff B, Ward E, Rairdan G, Broglie K, Wu G, van Esse P, Jones J, and Brommonschenkel S (2016).  A pigeonpea gene confers resistance to Asian soybean rust in soybean. Nature Biotechnology doi:10.1038/nbt.3554.