Resources

Open access resources for the plant disease community

The data hosted on this page are open access resources freely available to the scientific community to use and analyze for research purposes.

PROJECTS

Resistance Gene Diversity

Arabidopsis thaliana 

The collection of resistance genes from 69 accessions of Arabidopsis thaliana was sequenced as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratories of Detlef Weigel (MPI), Jeff Dangl (UNC), and Jonathan Jones (TSL) and conducted under the auspices of the 2Blades Foundation. The provided data contain circular consensus sequence (CCS) reads from Resistance Gene Enrichment Sequencing (Ren-Seq) produced on the PacBio platform. These reads were subsequently assembled into contigs.

Restrictions on data use

You are welcome to use these data to advance your studies of the plant immune system.

By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a genome-wide, whole-assembly scale prior to publication by the producers (Reserved Analyses). Reserved Analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and comparisons with other A. thaliana accessions or other species.

The embargo on publication of Reserved Analyses by researchers outside of the pan-NLR’ome Project is expected to extend until a first publication of the results of the project is accepted. Academic users are free to publish papers dealing with specific genes or small sets of genes. If these data are used for publication, please contact the responsible persons below to determine the acknowledgement.

Download

(Data hosted at Max Planck Institute for Developmental Biology Tübingen)

 

For more information please contact:

Prof. Detlef Weigel

Max Planck Institute for Developmental Biology

email: weigel@tue.mpg.de

Prof. Jeff Dangl

University of North Carolina at Chapel Hill

email: dangl@email.unc.edu

 

Nicotiana and Solanum species

The collection of resistance genes from four species of Nicotiana and four Solanum species were sequenced as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Jonathan Jones (TSL) and conducted under the auspices of the 2Blades Foundation. The data were uploaded to European Nucleotide Archive (ENA) and contain subreads from Resistance Gene Enrichment Sequencing (RenSeq) produced on the PacBio platform.

Sample ERS1972100 (SAMEA104347122) Nicotiana tabacum 
https://www.ncbi.nlm.nih.gov/sra/ERX2225148%5baccn

Sample ERS1972101 (SAMEA104347123) Nicotiana sylvestris 
https://www.ncbi.nlm.nih.gov/sra/ERX2225149%5baccn

Sample ERS1972102 (SAMEA104347124) Nicotiana tomentosiformis 
https://www.ncbi.nlm.nih.gov/sra/ERX2225150%5baccn

Sample ERS1972103 (SAMEA104347125) Solanum tuberosum Group Phureja 
https://www.ncbi.nlm.nih.gov/sra/ERX2225151%5baccn

Sample ERS1972104 (SAMEA104347126) Solanum tuberosum cv Maris Piper 
https://www.ncbi.nlm.nih.gov/sra/ERX2225152%5baccn 

Sample ERS1972105 (SAMEA104347127) Solanum lycopersicum accession FLA8059 
https://www.ncbi.nlm.nih.gov/sra/ERX2225153%5baccn

Sample ERS1972106 (SAMEA104347128) Solanum americanum accession 944750095 
https://www.ncbi.nlm.nih.gov/sra/ERX2225154%5accn

Sample ERS1972107 (SAMEA104347129) Nicotiana benthamiana 
https://www.ncbi.nlm.nih.gov/sra/ERX2225147%5baccn

 

For more information please contact:

Dr. Jonathan Jones

The Sainsbury Laboratory, Norwich UK

email: jonathan.jones@sainsbury-laboratory.ac.uk  

This research is funded by the Gordon and Betty Moore Foundation through Grant GBMF4725 to Two Blades Foundation