2BladesThe data hosted on this page are open access resources freely available to the scientific community to use and analyze for research purposes.
Resistance Gene Diversity Project
Arabidopsis | Nicotiana and Solanum | Tomatoes and other Solanaceae | Rice
Arabidopsis thaliana
The collection of resistance genes from 69 accessions of Arabidopsis thaliana was sequenced as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratories of Detlef Weigel (MPI), Jeff Dangl (UNC), and Jonathan Jones (TSL) and conducted under the auspices of the 2Blades Foundation. The provided data contain circular consensus sequence (CCS) reads from Resistance Gene Enrichment Sequencing (Ren-Seq) produced on the PacBio platform. These reads were subsequently assembled into contigs.
Additional resources related to this data set are described and linked in Van der Weyer et al., 2019.
Download
(Data hosted at Max Planck Institute for Developmental Biology Tübingen)
For more information please contact:
Prof. Detlef Weigel
Max Planck Institute for Developmental Biology
email: weigel@tue.mpg.de
Prof. Jeff Dangl
University of North Carolina at Chapel Hill
email: dangl@email.unc.edu
Nicotiana and Solanum species
The collection of resistance genes from four species of Nicotiana and four Solanum species were sequenced as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Jonathan Jones (TSL) and conducted under the auspices of the 2Blades Foundation. The data were uploaded to European Nucleotide Archive (ENA) and contain subreads from Resistance Gene Enrichment Sequencing (RenSeq) produced on the PacBio platform.
| Species | Sample | NCBI Accession |
|---|---|---|
| Nicotiana tabacum | ERS1972100 (SAMEA104347122) | ERX2225148 |
| Nicotiana sylvestris | ERS1972101 (SAMEA104347123) | ERX2225149 |
| Nicotiana tomentosiformis | ERS1972102 (SAMEA104347124) | ERX2225150 |
| Solanum tuberosum Group Phureja | ERS1972103 (SAMEA104347125) | ERX2225151 |
| Solanum tuberosum cv Maris Piper | ERS1972104 (SAMEA104347126) | ERX2225152 |
| Solanum lycopersicum accession FLA8059 | ERS1972105 (SAMEA104347127) | ERX2225153 |
| Solanum americanum accession 944750095 | ERS1972106 (SAMEA104347128) | ERX2225154 |
| Nicotiana benthamiana | ERS1972107 (SAMEA104347129) | ERX2225147 |
For more information please contact:
Dr. Jonathan Jones
The Sainsbury Laboratory, Norwich UK
email: jonathan.jones@sainsbury-laboratory.ac.uk
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Tomatoes and other Solanaceae
The collection of resistance genes from tomato, pepper, N. benthamiana and wild Solanum species were sequenced as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Brian Staskawicz and conducted under the auspices of the 2Blades Foundation. The data were uploaded to the National Center for Biotechnology Information (NCBI) under the BioProject PRJNA496490 and contain circular consensus sequence (CCS) reads from Resistance Gene Enrichment Sequencing (RenSeq) produced on the PacBio platform.
Restrictions on data use
You are welcome to use these data to advance your studies of the plant immune system.
By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a genome-wide, whole-assembly scale prior to publication by the producers (Reserved Analyses). Reserved Analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and comparisons with other Solanaceae.
The embargo on publication of Reserved Analyses by researchers outside of the pan-NLR’ome Project is expected to extend until a first publication of the results of the project is accepted. Academic users are free to publish papers dealing with specific genes or small sets of genes. If these data are used for publication, please contact the responsible persons below to determine the acknowledgement.
| Species | NCBI Accession |
|---|---|
| S. lycopersicum Heinz | SRX4891006 |
| S. cheesmaniae 0422 | SRX4891000 |
| S. cheesmaniae 1039 | SRX4891003 |
| S. chmielewskii 1316 | SRX4891008 |
| S. chmielewskii 1330 | SRX4891001 |
| S. galapagense 0483 | SRX4891007 |
| S. galapagense 1136 | SRX4891004 |
| S. neorickii 1716 | SRX4891009 |
| S. pimpinellifolium 0722 | SRX4891005 |
| S. pimpinellifolium 1269 | SRX4891002 |
| C. annuum ECW | SRX4891011 |
| C. annuum ECW 20R | SRX4891012 |
| N. benthamiana | SRX4891010 |
For more information please contact:
Dr. Brian Staskawicz
University of California, Berkeley
email: stask@berkeley.edu
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Rice
NLR-encoding genes were sequenced from 66 accessions of Oryza sativa as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Jonathan Jones (TSL) in collaboration with Jean-Benoit Morel and Thomas Kroj (INRA) and managed by the 2Blades Foundation. Data were obtained via Resistance Gene Enrichment Sequencing (Ren-Seq) for 14 accessions via PacBio circular consensus sequence (CCS) and for 61 accessions (including those 14) via paired end Illumina reads on the HighSeq 2500 platform.
Restrictions on data use
You are welcome to use these data to advance your studies of the plant immune system.
By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a genome-wide, whole-assembly scale prior to publication by the producers (Reserved Analyses). Reserved Analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and comparisons with other Poaceae.
The embargo on publication of Reserved Analyses by researchers outside of the pan-NLR’ome Project is expected to extend until a first publication of the results of the project is accepted. Academic users are free to publish papers dealing with specific genes or small sets of genes. If these data are used for publication, please contact the responsible persons below to determine the acknowledgement.
All rice sequences can be downloaded through ENA under projects PRJEB23459 and PRJEB29200.
| Rice variety | Sample Accession |
|---|---|
| K1_Xiaogu | SAMEA104389502 (ERS2007444) |
| K8_Xiaogu | SAMEA104389503 (ERS2007445) |
| YYT72_Zinuo | SAMEA104389523 (ERS2007465) |
| P04_Baijao | SAMEA104389512 (ERS2007454) |
| T09_Acuce | SAMEA104389518 (ERS2007460) |
| YYT73_Acuce | SAMEA104389524 (ERS2007466) |
| V18_Baijao | SAMEA104389521 (ERS2007463) |
| YYT31_Acuce | SAMEA104389522 (ERS2007464) |
| E1_Hongjiao | SAMEA104389492 (ERS2007434) |
| Q7_Acuce | SAMEA104389514 (ERS2007456) |
| G9_Hongjiao | SAMEA104389495 (ERS2007437) |
| G13_Hongjiao | SAMEA104389494 (ERS2007436) |
| H15_Hongjiao | SAMEA104389497 (ERS2007439) |
| R17_Acuce | SAMEA104389515 (ERS2007457) |
| J05_Hongyang2 | SAMEA104389501 (ERS2007443) |
| M10_Acuce | SAMEA104389506 (ERS2007448) |
| S10_Acuce | SAMEA104389516 (ERS2007458) |
| B05_Baijao | SAMEA104389489 (ERS2007431) |
| V11_Baijao | SAMEA104389520 (ERS2007462) |
| F22_Hongjiao | SAMEA104389493 (ERS2007435) |
| H05_Hongjiao | SAMEA104389496 (ERS2007438) |
| HYYT76B_Huangpinuo | SAMEA104389498 (ERS2007440) |
| YYT78_Huangpinuo | SAMEA104389526 (ERS2007468) |
| Maratelli | SAMEA104389507 (ERS2007449) |
| Padi_Boenor | SAMEA104389513 (ERS2007455) |
| Kasalath | SAMEA104389504 (ERS2007446) |
| Kitaake | SAMEA104389505 (ERS2007447) |
| IRAT13 | SAMEA104389500 (ERS2007442) |
| Tetep | SAMEA104389519 (ERS2007461) |
| Oryzica_Llanos_5 | SAMEA104389511 (ERS2007453) |
| Azucena | SAMEA104389488 (ERS2007430) |
| Moroberekan | SAMEA104389508 (ERS2007450) |
| IR64 | SAMEA104389499 (ERS2007441) |
| Sariceltik | SAMEA104389517 (ERS2007459) |
| Nipponbare | SAMEA104389509 (ERS2007451) |
| Chepugu | SAMEA4975981 (ERS2794052) |
| Lubaigu | SAMEA4975982 (ERS2794053) |
| Zaogu | SAMEA4975983 (ERS2794054) |
| Epugu | SAMEA4975984 (ERS2794055) |
| Jianshuigu | SAMEA4975985 (ERS2794056) |
| Honglueduolu | SAMEA4975986 (ERS2794057) |
| Mingliangyou 527 | SAMEA4975987 (ERS2794058) |
| Liangyou 2161 | SAMEA4975988 (ERS2794059) |
| Jinpinggu | SAMEA4975989 (ERS2794060) |
| Luhonggu | SAMEA4975990 (ERS2794061) |
| B06 Acuce | SAMEA4975991 (ERS2794062) |
| P03 Acuce | SAMEA4975992 (ERS2794063) |
| D15 Baijiao | SAMEA4975993 (ERS2794064) |
| D09 Baijiao | SAMEA4975994 (ERS2794065) |
| T18 Acuce | SAMEA4975995 (ERS2794066) |
| YYT31 Bijiaolaojing | SAMEA4975996 (ERS2794067) |
| F13 Hongjiao | SAMEA4975997 (ERS2794068) |
| E5 Hongjiao | SAMEA4975998 (ERS2794069) |
| J08 Hongyang 2 | SAMEA4975999 (ERS2794070) |
| J11 Hongyang 2 | SAMEA4976000 (ERS2794071) |
| L13 Xiaogu | SAMEA4976001 (ERS2794072) |
| M1 Xiaogu | SAMEA4976002 (ERS2794073) |
| YYT60 Xiaogu | SAMEA4976003 (ERS2794074) |
| YYT62 Xiaogu | SAMEA4976004 (ERS2794075) |
| YYT65 Xiaogu | SAMEA4976005 (ERS2794076) |
| YYT24 Xiaogu | SAMEA4976006 (ERS2794077) |
| YYT76B_Huangpinuo | SAMEA104389525 (ERS2007467) |
| NSF-TV116 | SAMEA104389510 (ERS2007452) |
| Cocodrie_301379 | SAMEA104389491 (ERS2007433) |
| C101A51 | SAMEA104389490 (ERS2007432) |
| Zhenshan2 | SAMEA104389527 (ERS2007469) |
For more information please contact:
Dr. Jonathan Jones
The Sainsbury Laboratory, Norwich UK
email: jonathan.jones@sainsbury-laboratory.ac.uk
Triticeae
Triticum aestivum (Bread wheat)
NLR-encoding genes were sequenced from 100 wheat landraces as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Jonathan Jones (TSL) in collaboration with Dr. Brande Wulff (John Innes Centre) and under the auspices of 2Blades Foundation. The data were uploaded to the European Nucleotide Archive and can be downloaded under project PRJEB35692
Restrictions on data use
You are welcome to use these data to advance your studies of the plant immune system.
By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a genome-wide, whole-assembly scale prior to publication by the producers (Reserved Analyses). Reserved Analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and comparisons with other Triticeae.
The embargo on publication of Reserved Analyses by researchers outside of the pan-NLR’ome Project is expected to extend until a first publication of the results of the project is accepted. Academic users are free to publish papers dealing with specific genes or small sets of genes. If these data are used for publication, please contact the responsible persons below to determine the acknowledgement.
For more information please contact:
Dr. Jonathan Jones
The Sainsbury Laboratory, Norwich UK
email: jonathan.jones@sainsbury-laboratory.ac.uk
Dr. Brande Wulff
John Innes Centre
email: Brande.Wulff@jic.ac.uk
Triticum turgidum
NLR-encoding genes were sequenced from 59 accessions of the tetraploid wheat Triticum turgidum as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Jonathan Jones (TSL) in collaboration with Dr. Ksenia Krasileva (University of California, Berkeley) and under the auspices of 2Blades Foundation. The data were uploaded to the European Nucleotide Archive and can be downloaded under project PRJEB34907
Restrictions on data use
You are welcome to use these data to advance your studies of the plant immune system.
By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a genome-wide, whole-assembly scale prior to publication by the producers (Reserved Analyses). Reserved Analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and comparisons with other Triticeae.
The embargo on publication of Reserved Analyses by researchers outside of the pan-NLR’ome Project is expected to extend until a first publication of the results of the project is accepted. Academic users are free to publish papers dealing with specific genes or small sets of genes. If these data are used for publication, please contact the responsible persons below to determine the acknowledgement.
For more information please contact:
Dr. Jonathan Jones
The Sainsbury Laboratory, Norwich UK
email: jonathan.jones@sainsbury-laboratory.ac.uk
Dr. Ksenia Krasileva
University of California, Berkeley
email: kseniak@berkeley.edu
Aegilops sharonensis
NLR-encoding genes were sequenced from 100 accessions of Aegilops sharonensis as part of the GBMF-funded Resistance Gene Diversity (pan-NLR’ome) project performed by the laboratory of Jonathan Jones (TSL) in collaboration with Dr. Brande Wulff (John Innes Centre) and under the auspices of 2Blades Foundation. The data were uploaded to the European Nucleotide Archive and can be downloaded under projects PRJEB35211 and PRJEB35215.
Restrictions on data use
You are welcome to use these data to advance your studies of the plant immune system.
By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data on a genome-wide, whole-assembly scale prior to publication by the producers (Reserved Analyses). Reserved Analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, GC content, or any other genome feature, and comparisons with other Triticeae.
The embargo on publication of Reserved Analyses by researchers outside of the pan-NLR’ome Project is expected to extend until a first publication of the results of the project is accepted. Academic users are free to publish papers dealing with specific genes or small sets of genes. If these data are used for publication, please contact the responsible persons below to determine the acknowledgement.
For more information please contact:
Dr. Jonathan Jones
The Sainsbury Laboratory, Norwich UK
email: jonathan.jones@sainsbury-laboratory.ac.uk
Dr. Brande Wulff
John Innes Centre
email: Brande.Wulff@jic.ac.uk